RogueKiller is an anti-malware able to detect and remove generic malware and advanced threats like rootkits, rogues, worms. It also detects controversial programs (PUPs) as well as possible bad system modifications/corruptions (PUMs).
Malwarebytes is an anti-malware program able to detect and remove all kinds of threats that reside on your machine.
AdwCleaner is an anti-adware program developed by Malwarebytes able to detect and remove generic adware that open annoying ads on your machine.
RogueKillerCMD is the console version of RogueKiller, designed for automation, power users, or when no UI is available (safe mode with command line for example). Apart from scanning for malware, RogueKillerCMD provides several helpers to list and play with processes, services, registry keys...